Sawatsubashi, Shun Tokushima University Tokushima University Educator and Researcher Directory KAKEN Search Researchers
Joko, Yudai Tokushima University
Fukumoto, Seiji Tokushima University Tokushima University Educator and Researcher Directory KAKEN Search Researchers
Matsumoto, Toshio Tokushima University Tokushima University Educator and Researcher Directory KAKEN Search Researchers
Sugano, Shigeo S. Ritsumeikan University|Japan Science and Technology Agency KAKEN Search Researchers
CRISPR/Cas9-based genome editing has dramatically accelerated genome engineering. An important aspect of genome engineering is efficient knock-in technology. For improved knock-in efficiency, the non-homologous end joining (NHEJ) repair pathway has been used over the homology-dependent repair pathway, but there remains a need to reduce the complexity of the preparation of donor vectors. We developed the versatile NHEJ-based knock-in module for genome editing (VIKING). Using the consensus sequence of the time-honored pUC vector to cut donor vectors, any vector with a pUC backbone could be used as the donor vector without customization. Conditions required to minimize random integration rates of the donor vector were also investigated. We attempted to isolate null lines of the VDR gene in human HaCaT keratinocytes using knock-in/knock-out with a selection marker cassette, and found 75% of clones isolated were successfully knocked-in. Although HaCaT cells have hypotetraploid genome composition, the results suggest multiple clones have VDR null phenotypes. VIKING modules enabled highly efficient knock-in of any vectors harboring pUC vectors. Users now can insert various existing vectors into an arbitrary locus in the genome. VIKING will contribute to low-cost genome engineering.
Supplementary information : srep_8_593_s1.pdf
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srep_8_593.pdf 4.28 MB
srep_8_593_s1.pdf 1.81 MB
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